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Contents

Topic: caArray Usage

Release: caArray Up to 2.2.0

Date entered: 03/26/2009

Question

Which Files Can Be Uploaded into caArray?

I have array design files, microarray data files, and experiment-related publications and protocols. Which file can be stored in caArray? Where and how can I upload them into caArray?

Answer

As an information sharing tool, caArray can accept upload of many file types. The table below summarizes those file types, and where and how files are uploaded in caArray.

Upload Files into caArray

File Types

Validated?

File Destination

Uploading Step

Array Design File
(user Guide, p64)

Y

"Curation"
->"Manage Array Design"

{{"Manage Array Design"
-> "Import a New Array Design"}}

Files associated with samples:

  • Array Annotation file: .idf, .sdrf
  • Raw or Processed Array Data files
    (Any file type on the list under "Change File Types")

Y

{{"Experiment Management"
-> "Data"
->"Imported data"

"Experiment Management"
-> "Create/Propose Experiment"
or "My Experiment Workspace"
-> "Data"
-> "Manage Data"
-> "Upload New Data Files"
->Select Files
->Validate
->Import}}

Information Files Associated at Experiment level
(user Guide, p82)

  • Word documents,
  • Excel spreadsheets,
  • Power Point files, PDFs
    *Images

N

"Experiment Management"
->"Data"
->"Supplemental Files"

{{"Experiment Management"
->"Create/Propose Experiment"
or "My Experiment Workspace"
-> "Data"
-> "Manage Data"
-> "Upload New Data Files"
-> Select Files
-> "Add Supplemental Files"}}

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