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Agenda

EVS Discussion

Open System Tickets

Ticket Description Actions, Update
NCI-RITM046506 MEME URI not working, hostname usable as workaround

Still working on escalating this issue. Contact made.  Being escalated to management

NCI-INC0805939, NCI-INC0805936CTS2 down on Dev and QA
Met with Systems team to debug on Tu, Feb 27. Waiting to hear back on additional debugging work.  Zihua actively working on the issue and comparing lower and upper tiers.  Appears to be linked to OS update.
NCI-RITM0512149Security consult about IP traffic to Prod
Asked for dynamic IP throttling
 NCI-INC0808122Report Exporter down on Stage
Tech engaged and investigating

NCI-RITM0513127

Give Zihua He access to apache logs
Having issues with collectors and access to logs

SYSTEMS
EVS transition to virtual machines

STATUS:We need to have a decision about how to handle PROD Server - configured.  Met with Eric last week

Stage 2 VM updated from 2 to 32 CPUs

We were going to wait to switch STAGE from on prem to VM once PROD server is ready; so we can switch both PROD and STAGE at same time . 

We are waiting until OS conversions are complete and then will work on Prod system. 

  • DECIDED: conversion first, then transition to VMs.  Likely end of March
  • we are probably a ways from PROD VM; STAGE VM saw issues pop up during transition



LEXEVS UPDATES

Monthly Planning and Focus

Completed Sprint - Sprint 217 (Feb 2 - Mar 4) -

Current Sprint  - Sprint 218 (Mar 5 - Mar 29) - Sprint 218

For the month of March 2024

  • Report Exporter

    • Start work on templating

  • Improvements, Refactoring Code Debt, Feature development:
  • Implementation of Java 17
  • DataDog
  • NCI Terms Browser
Technical Debt remediation

LexEVS Code Debt Refactoring - Java 17 refactoring currently is in progress

  • Tomcat 9 partially installed on Dev.  Waiting on Java 8 cts2 problems to be resolved before asking for completion
OS Updates
  • QA conversions starting - Dev,QA, Stage updated for LexEVS. Some issues with CTS2 being debugged
  • Protege and SIP in progress/completion
Report Exporter
  • Working on templating starting
  • Wait time indicator on QA
    • Release notes written
  • Staging down, ticket entered.


Security


Statistics Dashboard

OBJECTIVE 
Complete Migration of Statistics Dashboard from SumoLogic to DataDog by March 2024.  Hard end in April.

STATUS

  • S3 bucket has been created, but is blocked by next step of installing a Datadog / AWS integration. 
    • Cyrus to provide ARN and script that will be accessing the bucket.
    • Possible done tomorrow
  • RUM installation started
  • Collectors installed on all servers except evs.nci.nih.gov 
  • No apache logs being pulled in for on-prem servers - Cyrus reaching out to DataDog support

ACTIONS

    • Mark is working with Syed and Cyrus for configuration work. Systems is having problems doing configuration
Comparison/Mapping Tool

On Hold

AWS Cloud to be in Separate Account

Waiting on AWS team

Team Absences


Mayo Team - Andrew off March 6,15

MSC - Kim off March 15

Leidos - 

QA - Itendra out indefinitely

Gov - 



EVS SERVICE AND ARCHITECTURE GROUP UPDATES
EVS Service and Architecture Group

EVS PROD Outage

  • Broken pipe issues on Prod - client being cut off before server completes query
    • Research required - possibly client abandoning
    • Requests not waiting but server is piling on queries
  • Some remediation being made on Stage 2 to help with startup caching
  • Contact Us page - being discussed with Lori


DATA UPDATES
Data
  • 24.02d ready for DataQA review

BROWSER UPDATES

Browser
  • NCIt Browser with culled older jars has reached Prod, resolving some errors
  • Still working on stabilization of other errors, but think new server might resolve some issues
  • Some deployment issues with Dev and DataQA tiers.  Need to examine Jenkins projects
    • DataQA slow when resolving value sets - similar to what has been seen on other tiers

QA UPDATES

QA
  • Anika helping in Itendra's absence
  • Swathi finished v2.01 report exporter QA

TERMINOLOGIES LIFECYCLE REPORT

Terminology Updates and Schedule 

Mark Benson TPM Update

OS Conversion

This set will be converted on and rebooted morning of  

Server NameTier (DEV,QA,Stage,Prod)Purpose of ServerOn-prem/Cloud
nciws-q2022-cQAReport Writer 2Cloud
nciws-q1099-cQAEVS ExploreCloud
ncias-q2229-cQAEVSRESTAPICloud
ncidb-q294-cQAStardogCloud
nciws-q2361-vQAEVS Legacy ApplicationsOn-prem
ncias-q1744-vQAOperations processingOn-prem
nciws-q2261-cQAReport ExporterCloud
ncias-q1744-vQAserver used to process NCIT (and other) vocabularies.  It’s under the protege projectOn-prem
nciws-q791-vQAProtege QA serverOn-prem
https://gdc-mvs-qa.nci.nih.gov/gdc/
nciws-q916-v
QAGDC MVSOn-prem
https://sip-qa.semantics.cancer.gov/evssip/
nciws-q2247-v
QAEVS SIPOn-prem
ncias-q3009-cQA(meme-test) serverCloud


Vocabularies Slated for Production

  Terminology Updates and Schedule


Vocabulary Name

Local Name

Version

Arrival Date

Loaded to data-qa DB

Date to Stage

Date to Production

Vocabulary Name in LexBIG

Short Name

Version identifier

Date the vocabulary arrived for processing

Has the vocabulary been loaded to the data-qa database?

Approximate date the vocabulary version is scheduled to move to staging

Approximate date the vocabulary version is scheduled to move to production

NCI ThesaurusNCIt23.12d12/27/2023yes01/05/2401/09/24
NCIt-HGNCNCIt-HGNCJan202412/27/2023yes01/05/2401/09/24
SwissProtSwissProtJan202412/27/2023yes01/05/2401/09/24
ChEBIChEBIv22801/09/24yes01/12/2401/17/24
HGNCHGNCJan202401/09/24yes01/12/2401/17/24

QA Schedule and Status

see  QA Scheduling and Status



SECTION FOR FUNCTIONAL SYSTEM TESTING STATUS ::

Application and Version

Percentage Complete

Estimated Completion Date per Iteration

Priority Level 

Type Of Testing

Current Tier for Release (DEV, QA, Stage, Prod)

Expected Production Date

EVS REST API (v1.6)

100%

5/27/2022

High

Progression + Regression 

QA

6/6/2022

EVS Explore (v1.6)

100%

5/27/2022

High

Progression + Regression

QA

6/6/2022

EVS REST API(v1.6)

100%

6/1/2022

High

Regression

Stage

6/6/2022

EVS Explore(v1.6)

100%

6/2/2022

High

Regression

Stage

6/7/2022

EVS REST API(22.05e) - Monthly Data Deployment

100%

6/1/2022

High

Regression

Stage

6/3/2022

EVS REST API(22.05e) - Monthly Data Deployment

100%

6/3/2022

High

Regression

Production

6/3/2022

EVS REST API(v1.6)

100%

6/6/2022

High

Regression

Production

6/6/2022

EVS Explore(v1.6)

100%

6/7/2022

High

Regression

Production

6/7/2022

NCIt,NCIm,TermForm(22.05e + GO & HGNC Jun 2022 Deployment)

100%

6/3/2022

High

Regression

Stage

6/6/2022

NCIt,NCIm,TermForm(22.05e + GO & HGNC Jun 2022 Deployment)

100%

6/6/2022

High

Regression

Production

6/8/2022

EVS REST API(22.06d) - Monthly Data Deployment

100%

6/30/2022

High

Regression

Stage , Production

6/30/2022

NCIt,NCIm,TermForm(22.06d) - Monthly Data Deployment

100%

7/8/2022

High

Smoke

Stage,Production

7/8/2022

NCIt,NCIm,TermForm(22.05e + GO & HGNC Jun 2022 Deployment)

100%

6/3/2022

High

Regression

Stage

6/6/2022

NCIt,NCIm,TermForm(22.06d) - Monthly Data Deployment100%7/8/2022HighSmokeStage,Production7/8/2022
NCIt,NCIm,TermForm(ChEBI, GO & HGNC July 2022 Deployment)100%7/12/2022HighSmokeStage7/12/2022
NCIt,NCIm,TermForm(ChEBI, GO & HGNC July 2022 Deployment)100%7/13/2022HighSmokeProduction7/13/2022

EVS REST API(22.07d) - Monthly Data Deployment

100%

7/27/2022

High

Regression

Stage , Production

7/27/2022

NCIt,NCIm,TermForm(22.07d) - Monthly Data  Deployment100%8/1/2022HighSmokeStage,Production8/1/2022
NCIt,NCIm,TermForm(CanMED, GO & HGNC AUG 2022 Deployment)100%8/3/2022HighSmokeStage,Production8/3/2022

EVS REST API - 1.6.1 (Hot Fix Deployment)

100 %

8/3/2022

Highest

Progression + Regression

Stage,Production

8/4/2022


Attendees

Name

Role

Present

Remennik, LyubovNIH/NCIcheck mark button 

Safran, Tracy

NIH/NCI [C]
Ong, Kim LNIH/NCI [C]check mark button 
Lucas, Jason RNIH/NCI [C]check mark button 
Bauer, Scott  NIH/NCI [C]
Alkis, BarryNIH/NCI [C]<checked in>
Solie, ChuckNIH/NCI [C]
Kondareddy, SwathiNIH/NCI [C]check mark button
Singh, ItendraNIH/NCI [C]check mark button
Zhang, ChaoNIH/NCI [C]check mark button
Johnson, ConnieNIH/NCI [C]
Whiteman, LoriNIH/NCI [C]
Benson, MarkNIH/NCI [C]check mark button
Andrew MooreNIH/NCI [C]



JIRA Issues


Recent EVS Stats Dashboard Related Bugs and Features 

Key Summary T Created Reporter P Status
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Recent Report Exporter Related Bugs and Features 

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Key Summary T Created Reporter P Status
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Recent LexEVS Related Bugs and Features 

Key Summary T Created Reporter P Status
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Recent CTS2 Service Related Issues 

Key Summary T Created Updated Due Assignee Reporter P Status Resolution
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ASSIGNED ACTION ITEMS

DescriptionDue dateAssigneeTask appears on
09 Oct 2023Benson, Mark (NIH/NCI) [C]LexEVS Meeting Minutes - 2023.10.25
  • Benson, Mark (NIH/NCI) [C] to schedule a mtg/ discuss a possible CSS file/ENV variable for banner message and report on  
11 Oct 2023Benson, Mark (NIH/NCI) [C]LexEVS Meeting Minutes - 2023.10.25
11 Oct 2023Benson, Mark (NIH/NCI) [C]LexEVS Meeting Minutes - 2023.10.25
  • Benson, Mark (NIH/NCI) [C] to schedule a mtg/ discuss a possible CSS file/ENV variable for banner message and report on  
11 Oct 2023Benson, Mark (NIH/NCI) [C]LexEVS Meeting Minutes - 2023.10.18
11 Oct 2023Benson, Mark (NIH/NCI) [C]LexEVS Meeting Minutes - 2023.10.18
  • Benson, Mark (NIH/NCI) [C] to schedule a mtg/ discuss a possible CSS file/ENV variable for banner message and report on  
11 Oct 2023Benson, Mark (NIH/NCI) [C]LexEVS Meeting Minutes - 2023.10.11
  • Benson, Mark (NIH/NCI) [C] to schedule a mtg/ discuss a possible CSS file/ENV variable for banner message and report on  
11 Oct 2023Benson, Mark (NIH/NCI) [C]LexEVS Meeting Minutes - 2023.10.04
Benson, Mark (NIH/NCI) [C]LexEVS Meeting Minutes - 2024.09.11
  • Get the Report ready and submitted this week
LexEVS Meeting Minutes - 2024.09.04
  • Mark to follow up on ticket status/ subproject structure
LexEVS Meeting Minutes - 2024.09.04
  • Mark to follow up on ticket status/ subproject structure
LexEVS Meeting Minutes - 2024.08.28
  • Mark to follow up on ticket status/ subproject structure
LexEVS Meeting Minutes - 2024.08.21
  • Mark to follow up on ticket status/ subproject structure
LexEVS Meeting Minutes - 2024.08.14
  • Tracy to ping for status
LexEVS Meeting Minutes - 2024.08.14
  • Tracy to send invite to systems to discuss migration in this meeting
LexEVS Meeting Minutes - 2024.07.17
  • Temporarily block Singapore traffic
LexEVS Meeting Minutes - 2024.06.05
  • Tracy to request shut down of instance to save resources
LexEVS Meeting Minutes - 2024.06.05
  • Temporarily block Singapore traffic
LexEVS Meeting Minutes - 2024.05.29
  • Tracy to request shut down
LexEVS Meeting Minutes - 2024.05.29
  • Check status of termform and Tomcat9
LexEVS Meeting Minutes - 2024.05.15



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